chrom1 pos1 gene1 chrom2 pos2 gene2 name split span strand1 strand2 untemplated_insert comment chr2 43644796 PLEKHH2 chr2 17592070 VSNL1 TCGA-HC-8262 33 12 + + chr1 156333547 CCT3 chr1 155832950 GON4L TCGA-HC-8262 31 2 - - chr1 156333547 CCT3 chr1 155834404 GON4L TCGA-HC-8262 21 14 - - chr1 108657451 HENMT1 chr1 28508128 RCC1 TCGA-HC-8262 1 1 - + chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-HC-8262 27 9 - - chr21 41498119 TMPRSS2 chr21 38474121 ERG TCGA-HC-8262 28 4 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-HC-8262 99 5 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-HC-8262 2 5 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-HC-8262 33 17 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-HC-8262 3 4 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-HC-8262 8 11 - - chr6 75848531 MYO6 chr1 71698139 NEGR1 TCGA-HC-8262 36 1 + - chr16 71879907 ZNF821 chr16 53235185 CHD9 TCGA-HC-8262 12 2 - + chr1 24646073 SRRM1 chr1 40738836 NFYC TCGA-HC-8262 37 7 + + chr10 110919657 SHOC2 chr2 39704080 TMEM178 TCGA-HC-8262 33 13 + + chr12 8465629 CLEC6A chr12 8520226 CLEC4D TCGA-HC-8262 2 4 + + chr12 8477502 CLEC6A chr12 8513659 CLEC4D TCGA-HC-8262 1 4 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-HC-8262 2 4 + + chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-HC-8262 3 4 + + chr10 46033305 MSMB chr14 21361332 SUPT16H TCGA-HC-8262 14 14 - - chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-TP-A8TV 2 2 + + chr7 43729429 COA1 chr7 38535011 AMPH TCGA-TP-A8TV 37 15 - - chr1 167383951 POU2F1 chr1 171258082 FMO1 TCGA-TP-A8TV 5 20 + + chr4 94758068 BMPR1B chr4 94640276 PDLIM5 TCGA-TP-A8TV 1 1 + + chr7 43729429 C7orf44 chr7 38535011 AMPH TCGA-TP-A8TV 24 16 - - chr7 42076752 GLI3 chr7 54544622 VSTM2A TCGA-TP-A8TV 5 5 - + GC chr8 81686252 IMPA1 chr8 108082807 RSPO2 TCGA-TP-A8TV 10 1 - - chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-TP-A8TV 1 2 - - chr2 44169274 PPM1B chr2 42753374 MTA3 TCGA-TP-A8TV 17 15 + + chr3 114500352 ZBTB20 chr3 114294000 TIGIT TCGA-TP-A8TV 39 1 - + chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-G9-6369 1 13 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-G9-6369 8 1 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-G9-6369 133 18 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-G9-6369 342 14 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8IK 371 30 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8IK 154 15 - - chr21 41507950 TMPRSS2 chr7 13939246 ETV1 TCGA-YL-A8S9 306 183 - - chr21 41508081 TMPRSS2 chr7 13931749 ETV1 TCGA-YL-A8S9 1 54 - - chr21 41508081 TMPRSS2 chr7 13939246 ETV1 TCGA-YL-A8S9 756 58 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-YL-A8S9 1 1 - - chr3 132356855 ACPP chr5 34005899 AMACR TCGA-YL-A8S9 9 14 + - chr1 165827932 UCK2 chr19 49335714 CD37 TCGA-YL-A8S9 3 3 + + chr16 75648552 TERF2IP chr1 103664331 AMY1A TCGA-YL-A8S9 26 20 + + chr16 75648552 TERF2IP chr1 103579311 AMY1A TCGA-YL-A8S9 21 1 + + chr7 4077189 SDK1 chr5 34005899 AMACR TCGA-YL-A8S9 1 3 + - chr1 205680394 SLC45A3 chr7 13939246 ETV1 TCGA-YL-A8S9 4 2 - - chr1 145623714 GPR89A chr8 42925557 HOOK3 TCGA-YL-A8S9 31 3 + + chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-ZG-A9L6 9 14 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-ZG-A9L6 15 13 - - chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-ZG-A9L6 1 1 + + chr7 43729429 C7orf44 chr7 44153463 GCK TCGA-ZG-A9L6 38 18 - - chr1 28518308 RCC1 chr14 50901829 ABHD12B TCGA-EJ-A65E 1 18 + + chr1 28508160 RCC1 chr14 50901829 ABHD12B TCGA-EJ-A65E 6 18 + + chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-EJ-A65E 4 8 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-EJ-A65E 2 2 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-EJ-A65E 96 8 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-EJ-A65E 32 8 - - chr6 348841 DUSP22 chr6 43138849 PTK7 TCGA-EJ-A65E 25 7 + + chr3 50350982 CYB561D2 chr3 56019033 ERC2 TCGA-ZG-A8QY 18 5 - - chr5 60185557 PDE4D chr5 60904873 ERCC8 TCGA-ZG-A8QY 4 17 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-ZG-A8QY 2 3 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-ZG-A8QY 20 10 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-ZG-A8QY 3 1 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-ZG-A8QY 7 3 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-ZG-A8QY 102 3 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-ZG-A8QY 33 5 - - chr12 101319635 UTP20 chr12 100334166 SCYL2 TCGA-ZG-A8QY 21 9 + + chr12 57732403 AGAP2 chr10 59684327 SLC16A9 TCGA-ZG-A8QY 5 3 - - chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-ZG-A8QY 1 2 - - chr19 3359685 NFIC chr19 3273872 CELF5 TCGA-ZG-A8QY 37 14 + + chr19 3366666 NFIC chr19 3273872 CELF5 TCGA-ZG-A8QY 16 19 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-ZG-A8QY 3 2 + + chr17 46192823 KANSL1 chr3 47849867 DHX30 TCGA-CH-5737 9 4 - + chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-CH-5737 172 14 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-CH-5737 63 16 - - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-CH-5737 2 16 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-CH-5737 1 1 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-CH-5737 11 9 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-CH-5737 6 15 - - chr6 70773425 SMAP1 chr6 87088207 CGA TCGA-CH-5737 30 9 + - chr7 140111095 JHDM1D chr7 140781693 BRAF TCGA-CH-5737 29 7 - - chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-CH-5737 4 2 + + chr12 8465629 CLEC6A chr12 8513059 CLEC4D TCGA-CH-5737 2 1 + + chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-VP-A87H 1 10 + + chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-VP-A87H 28 10 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-VP-A87H 6 12 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-VP-A87H 24 13 - - chrX 16947134 REPS2 chrX 16818574 TXLNG TCGA-VP-A87H 19 2 + + chr19 40534343 SPTBN4 chr19 38182519 SIPA1L3 TCGA-KK-A8ID 32 17 + + TA chr5 179841907 C5orf45 chr5 180013311 RNF130 TCGA-KK-A8ID 33 10 - - chr6 41546867 FOXP4 chr6 38982346 DNAH8 TCGA-KK-A8ID 40 12 + + chr6 111482750 REV3L chr6 112144933 LAMA4 TCGA-KK-A8ID 5 11 - - chr16 3291460 ZNF263 chr16 2682497 KCTD5 TCGA-KK-A8ID 5 1 + + chr6 99349107 C6orf168 chr6 100540387 ASCC3 TCGA-KK-A8ID 6 3 - - chr19 2243573 SF3A2 chr19 828230 AZU1 TCGA-KK-A8ID 27 7 + + chr19 2243544 SF3A2 chr19 828230 AZU1 TCGA-KK-A8ID 3 15 + + chr12 32107544 BICD1 chr12 28450161 CCDC91 TCGA-KK-A8ID 30 8 + + chr4 86194336 MAPK10 chr4 88938241 FAM13A TCGA-KK-A8ID 18 3 - - chr13 29530538 SLC7A1 chr8 98108751 HRSP12 TCGA-KK-A8ID 11 6 - - chr14 69658713 KIAA0247 chr14 69864162 SMOC1 TCGA-KK-A8ID 35 1 + + chr13 20432102 CRYL1 chr13 20143305 GJA3 TCGA-KK-A8ID 34 17 - - chr15 44427772 CTDSPL2 chr15 44289159 CASC4 TCGA-KK-A8ID 6 2 + + chr6 99349107 FAXC chr6 100540387 ASCC3 TCGA-KK-A8ID 19 11 - - GTAATCA chr6 43076567 PTK7 chr6 43774341 VEGFA TCGA-KK-A8ID 26 7 + + chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8ID 121 17 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8ID 52 18 - - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-KK-A8ID 25 16 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-KK-A8ID 5 16 - - chr17 78122605 TMC6 chr15 70678206 UACA TCGA-KK-A8ID 28 11 - - chr12 110209216 IFT81 chr12 109187999 ACACB TCGA-KK-A8ID 7 4 + + chr2 178480909 PLEKHA3 chr2 176296860 MTX2 TCGA-KK-A8ID 24 1 + + chr7 1127257 C7orf50 chr7 4925532 MMD2 TCGA-KK-A8ID 34 9 - - chr17 80855547 RPTOR chr15 67400114 IQCH TCGA-KK-A8ID 13 14 + + chr17 5378232 RABEP1 chr17 4878317 MINK1 TCGA-KK-A8ID 19 2 + + chr3 66451559 LRIG1 chr3 67400851 SUCLG2 TCGA-KK-A8ID 29 19 - - chr20 46364371 SLC35C2 chr20 49656702 B4GALT5 TCGA-KK-A8ID 16 11 - - chr12 51172601 TFCP2 chr12 56216613 RNF41 TCGA-KK-A8ID 36 7 - - chr12 51172301 TFCP2 chr12 56216613 RNF41 TCGA-KK-A8ID 14 14 - - chr10 81876163 NRG3 chr10 78525330 LINC00856 TCGA-KK-A8ID 32 11 + + chr8 99721047 VPS13B chr13 27271484 RASL11A TCGA-KK-A8ID 20 8 + + chr7 3821583 SDK1 chr7 2432563 CHST12 TCGA-KK-A8ID 22 4 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-KK-A8ID 1 1 + + chr7 66639228 KCTD7 chr19 50854915 KLK3 TCGA-KK-A8ID 7 15 + + chr21 42754064 PDE9A chr21 42502296 SLC37A1 TCGA-KK-A8ID 16 15 + + TTGGCAT chr2 96612818 KIAA1310 chr2 99104118 TSGA10 TCGA-KK-A8ID 16 12 - - AGGCTATTC chr1 205680394 SLC45A3 chr7 13939246 ETV1 TCGA-KK-A7B0 489 968 - - chr1 205680394 SLC45A3 chr7 13935896 ETV1 TCGA-KK-A7B0 1 959 - - chr7 4077189 SDK1 chr5 34005899 AMACR TCGA-KK-A7B0 1 1 + - chr12 123974020 ZNF664 chr20 34105545 EIF2S2 TCGA-KK-A7B0 11 15 + - chr12 123974020 FAM101A chr20 34105545 EIF2S2 TCGA-KK-A7B0 8 4 + - chr21 41508081 TMPRSS2 chr17 43545367 ETV4 TCGA-KK-A7B0 2 1 - - chr21 41508081 TMPRSS2 chr17 43545668 ETV4 TCGA-KK-A7B0 1 1 - - chrX 18983855 PHKA2 chrX 18999960 GPR64 TCGA-KK-A8IA 29 2 - - chr17 10629597 MYH3 chr7 99667065 CYP3A5 TCGA-KK-A8IA 34 12 - - chr19 37335257 HKR1 chr19 58552185 CHMP2A TCGA-KK-A8IA 11 8 + - chr17 7583965 MPDU1 chr17 7247343 CTDNEP1 TCGA-KK-A8IA 35 8 + - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8IA 13 8 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8IA 5 8 - - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-KK-A8IA 1 8 - - chr21 41498119 TMPRSS2 chr21 38423561 ERG TCGA-KK-A8IA 1 8 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8IA 6 8 - - chr1 28508160 RCC1 chr14 50901829 ABHD12B TCGA-VN-A88R 2 3 + + chr7 4077189 SDK1 chr5 34005899 AMACR TCGA-VN-A88R 1 1 + - chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-VN-A88R 1 2 + + chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-EJ-A65M 1 44 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-EJ-A65M 3 6 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-EJ-A65M 32 36 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-EJ-A65M 37 33 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-EJ-A65M 104 45 - - chr21 41498119 TMPRSS2 chr21 38474121 ERG TCGA-EJ-A65M 6 4 - - chr3 132356855 ACPP chr19 49201963 TRPM4 TCGA-EJ-A65M 3 10 + + chr8 38267267 PPAPDC1B chr8 30070059 TMEM66 TCGA-EJ-A65M 37 12 - - chr2 219426586 DES chr19 50860604 KLK3 TCGA-EJ-A65M 6 7 + + chr16 89563080 RPL13 chr19 50860425 KLK3 TCGA-EJ-A65M 9 9 + + chr19 2339208 AC004410.1 chr19 2225388 DOT1L TCGA-V1-A9OX 35 2 - + chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-V1-A9OX 1 1 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-V1-A9OX 9 1 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-V1-A9OX 23 1 - - chr1 205680394 SLC45A3 chr7 13935896 ETV1 TCGA-V1-A9OX 4 3 - - chr6 38702971 GLO1 chr6 39420003 KIF6 TCGA-HC-A6AP 4 5 - - chr4 82818662 SEC31A chr4 145064692 ANAPC10 TCGA-HC-A6AP 26 5 - - chr3 126704399 CHCHD6 chr3 123831670 MYLK TCGA-HC-A6AP 38 20 + - chr15 88901551 MFGE8 chr15 88887344 HAPLN3 TCGA-HC-A6AP 1 1 - - chr5 98892525 CHD1 chr5 102413143 SLCO6A1 TCGA-HC-A6AP 10 3 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-VN-A88O 4 10 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-VN-A88O 6 1 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-VN-A88O 4 4 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-VN-A88O 67 26 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-VN-A88O 195 11 - - chr21 41507950 TMPRSS2 chr21 38584945 ERG TCGA-VN-A88O 1 26 - - chr21 41508081 TMPRSS2 chr21 38584945 ERG TCGA-VN-A88O 3 10 - - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-VN-A88O 2 26 - - chr5 60487942 PDE4D chr5 60599260 DEPDC1B TCGA-VN-A88O 10 11 - - chr20 47347855 ZMYND8 chr1 109573736 GNAI3 TCGA-2A-A8VO 2 20 - + chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-2A-A8VO 13 62 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-2A-A8VO 1 2 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-2A-A8VO 32 66 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-2A-A8VO 5 22 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-2A-A8VO 65 69 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-2A-A8VO 155 62 - - chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-KK-A59Z 3 2 + + chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-KK-A59Z 63 14 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-KK-A59Z 168 20 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-KK-A59Z 6 1 - - chr14 103662927 KLC1 chrX 101349956 BTK TCGA-KK-A59Z 24 8 + - chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-EJ-7330 2 3 + + chr8 47407961 KIAA0146 chr8 133029821 TG TCGA-EJ-7330 38 6 + + chr1 102886910 COL11A1 chr1 101026061 DPH5 TCGA-EJ-7330 17 6 - - chr6 83940601 CYB5R4 chr6 83044659 UBE2CBP TCGA-EJ-7330 11 5 + - chr19 49642242 SCAF1 chr19 49328828 CD37 TCGA-EJ-7330 7 11 + + chr7 122393441 CADPS2 chr7 21615114 DNAH11 TCGA-EJ-7330 9 8 - + chr4 94758068 BMPR1B chr4 94640276 PDLIM5 TCGA-EJ-7330 40 16 + + chr3 177160871 TBL1XR1 chr3 179198750 PIK3CA TCGA-EJ-7330 4 12 - + chr3 177197121 TBL1XR1 chr3 179198750 PIK3CA TCGA-EJ-7330 16 10 - + chr3 177196340 TBL1XR1 chr3 179198750 PIK3CA TCGA-EJ-7330 2 3 - + chr3 177163978 TBL1XR1 chr3 179198750 PIK3CA TCGA-EJ-7330 1 8 - + chr2 20449439 RHOB chr9 73157654 ANXA1 TCGA-EJ-7330 8 13 + + chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-EJ-7330 200 14 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-EJ-7330 58 15 - - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-EJ-7330 12 15 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-EJ-7330 3 13 - - chr15 49876278 ATP8B4 chr15 28081895 OCA2 TCGA-EJ-7330 15 6 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-V1-A9ZK 1 1 - - chr7 16646288 BZW2 chr11 4106046 RRM1 TCGA-V1-A9ZK 4 7 + + chr10 35090179 CUL2 chr10 94687770 CYP2C18 TCGA-V1-A9ZK 32 5 - + chr10 35090430 CUL2 chr10 94687770 CYP2C18 TCGA-V1-A9ZK 37 11 - + chr7 30355833 ZNRF2 chr7 33264290 BBS9 TCGA-V1-A9ZK 22 1 + + chr4 94758068 BMPR1B chr4 94640276 PDLIM5 TCGA-V1-A9ZK 28 13 + + chr4 94758068 BMPR1B chr4 94618004 PDLIM5 TCGA-V1-A9ZK 1 13 + + chrX 52955154 FAM156A chrX 52515573 XAGE1C TCGA-V1-A9ZK 34 3 - - chr7 114366640 FOXP2 chr10 24999546 ENKUR TCGA-V1-A9ZK 12 12 + - chr4 98293515 RAP1GDS1 chr4 99949740 H2AFZ TCGA-V1-A9ZK 31 16 + - chr1 178300118 RASAL2 chr1 177936365 AL359075.1 TCGA-V1-A9ZK 14 10 + - chr14 37606742 TTC6 chr14 37546905 MIPOL1 TCGA-V1-A9ZK 10 9 + + chr14 37596008 TTC6 chr14 37499908 MIPOL1 TCGA-V1-A9ZK 36 4 + + chr14 37606742 TTC6 chr14 37499908 MIPOL1 TCGA-V1-A9ZK 23 16 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-V1-A9ZK 2 3 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-HC-7738 3 3 + + chr1 153974512 JTB chr2 38076181 CYP1B1 TCGA-HC-7738 2 8 - - chr1 46185958 TSPAN1 chr21 42315596 TFF3 TCGA-HC-7738 27 6 + - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-HC-7738 3 9 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-HC-7738 4 7 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-HC-7738 5 9 - - chr4 112232174 AP1AR chr4 114870950 NDST4 TCGA-HC-7738 30 16 + - chr3 132356855 ACPP chr19 41242883 AXL TCGA-J4-A6G3 38 7 + + chr1 30980062 PUM1 chr2 69374113 GFPT1 TCGA-J4-A6G3 37 6 - - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-J4-A6G3 1 124 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-J4-A6G3 3 192 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-J4-A6G3 158 135 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-J4-A6G3 45 124 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-J4-A6G3 156 192 - - chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-J4-A6G3 1 1 - - chr7 85153608 SEMA3D chr7 128339791 RBM28 TCGA-CH-5788 5 20 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-CH-5788 28 17 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-CH-5788 74 28 - - chr21 41498119 TMPRSS2 chr21 38474121 ERG TCGA-CH-5788 6 7 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-CH-5788 8 28 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-CH-5788 2 2 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-CH-5788 20 19 - - chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-CH-5788 2 2 - - chr1 28508160 RCC1 chr14 50901829 ABHD12B TCGA-CH-5788 1 1 + + chr1 41142878 SCMH1 chr1 39479798 MACF1 TCGA-CH-5788 14 16 - + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-CH-5788 9 4 + + chr2 95100837 MRPS5 chr2 151697648 NEB TCGA-CH-5788 22 13 - - chr8 50590917 SNTG1 chr8 56214597 CHCHD7 TCGA-CH-5788 38 16 + + chr5 112792529 APC chr5 94154124 KIAA0825 TCGA-CH-5788 39 14 + - chr2 156435804 GPD2 chr2 157284282 GALNT5 TCGA-CH-5788 39 4 + + chr1 45654543 GPBP1L1 chr1 40267786 ZMPSTE24 TCGA-CH-5788 39 15 - + chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-YL-A8HM 1 1 - - chr21 41508081 TMPRSS2 chr17 43545668 ETV4 TCGA-YL-A8HM 2 1 - - chr21 41508081 TMPRSS2 chr17 43545367 ETV4 TCGA-YL-A8HM 89 1 - - chr21 41507950 TMPRSS2 chr17 43545367 ETV4 TCGA-YL-A8HM 15 2 - - chr18 13278188 LDLRAD4 chr14 26480143 NOVA1 TCGA-YL-A8HM 33 14 + - chr1 243255040 CEP170 chr1 159010003 IFI16 TCGA-YL-A8HM 19 8 - + chr1 33328870 PHC2 chr14 102102085 HSP90AA1 TCGA-YL-A8HM 32 15 - - chr15 88905757 MFGE8 chr15 89210809 RLBP1 TCGA-YL-A8HM 21 2 - - chr18 13278188 C18orf1 chr14 26480143 NOVA1 TCGA-YL-A8HM 9 10 + - chr9 23821605 ELAVL2 chr7 117664688 CFTR TCGA-YL-A8HM 11 8 - + chr9 23825806 ELAVL2 chr7 117664688 CFTR TCGA-YL-A8HM 4 19 - + chr14 75147664 TMED10 chr17 32446945 PSMD11 TCGA-YL-A8HM 20 18 - + chr4 1166937 SPON2 chr2 20622319 HS1BP3 TCGA-YL-A8HM 15 1 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-QU-A6IL 22 9 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-QU-A6IL 63 5 - - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-QU-A6IL 1 9 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-QU-A6IL 2 1 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-QU-A6IL 1 1 - - chrX 155120168 BRCC3 chr5 141640671 RELL2 TCGA-XK-AAJ3 3 3 + + chr12 32399959 FGD4 chr12 27714780 MRPS35 TCGA-XK-AAJ3 26 18 + + chr12 32399959 FGD4 chr12 27755181 MRPS35 TCGA-XK-AAJ3 17 20 + + chr5 96986670 LNPEP chr5 103201522 PPIP5K2 TCGA-XK-AAJ3 30 6 + + chr1 28518308 RCC1 chr14 50901829 ABHD12B TCGA-XK-AAJ3 4 1 + + chr14 37591400 FOXA1 chr14 37499908 MIPOL1 TCGA-XK-AAJ3 38 5 - + chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-XK-AAJ3 542 11 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-XK-AAJ3 171 33 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-XK-AAJ3 5 6 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-XK-AAJ3 4 8 - - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-XK-AAJ3 11 33 - - chr4 94758068 BMPR1B chr4 94523724 PDLIM5 TCGA-XK-AAJ3 3 1 + + chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-XK-AAJ3 4 2 - - chr12 57726000 AGAP2 chr10 59675000 SLC16A9 TCGA-XK-AAJ3 6 4 - - chr7 24291865 NPY chr10 68964102 DDX21 TCGA-G9-6333 35 2 + + chr3 120002046 GSK3B chr3 182913861 ATP11B TCGA-G9-6333 21 20 - + chr6 128240035 PTPRK chr6 127290277 ECHDC1 TCGA-G9-6333 8 20 - - chr1 205680394 SLC45A3 chr7 13939246 ETV1 TCGA-G9-6333 1 1 - - chr1 205679811 SLC45A3 chr21 38445620 ERG TCGA-G9-6333 1 113 - - chr1 205680393 SLC45A3 chr21 38445621 ERG TCGA-G9-6333 69 98 - - chr12 121237694 CAMKK2 chr12 121516863 KDM2B TCGA-G9-6333 34 17 - - chr7 159034212 VIPR2 chr2 119441599 SCTR TCGA-G9-6333 31 18 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-2A-A8VX 4 2 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-2A-A8VX 7 2 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-2A-A8VX 5 2 - - chr4 94758068 BMPR1B chr4 94618004 PDLIM5 TCGA-2A-A8VX 3 3 + + chr12 8465629 CLEC6A chr12 8518164 CLEC4D TCGA-2A-A8VX 5 3 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-2A-A8VX 1 2 + + chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-2A-A8VX 3 2 + + chr5 168371533 WWC1 chr1 240177921 FMN2 TCGA-2A-A8VX 13 6 + + chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-YL-A9WI 66 82 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-YL-A9WI 66 79 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-YL-A9WI 172 131 - - chr21 41498119 TMPRSS2 chr21 38423561 ERG TCGA-YL-A9WI 1 82 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-YL-A9WI 13 130 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-YL-A9WI 7 5 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-YL-A9WI 6 47 - - chr21 41498119 TMPRSS2 chr21 38474121 ERG TCGA-YL-A9WI 4 3 - - chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-YL-A9WI 1 1 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-YL-A9WI 3 1 + + chr1 15848150 SPEN chr1 15341736 FHAD1 TCGA-YL-A9WI 1 5 + + chr11 10804170 EIF4G2 chr11 10849913 ZBED5 TCGA-YL-A9WI 39 16 - - chr1 108649341 HENMT1 chr1 28508128 RCC1 TCGA-V1-A9OF 3 1 - + chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-V1-A9OF 5 131 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-V1-A9OF 104 135 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-V1-A9OF 122 132 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-V1-A9OF 327 193 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-V1-A9OF 8 192 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-V1-A9OF 3 59 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-V1-A9OF 4 1 - - chr21 41498119 TMPRSS2 chr21 38474121 ERG TCGA-V1-A9OF 4 1 - - chr8 47953620 PRKDC chr8 48043033 UBE2V2 TCGA-KK-A8IB 1 1 - + chr12 8465629 CLEC6A chr12 8513117 CLEC4D TCGA-KK-A8IB 1 3 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-KK-A8IB 2 3 + + chr12 8465629 CLEC6A chr12 8518164 CLEC4D TCGA-KK-A8IB 4 3 + + chr8 58594232 NSMAF chr8 61458307 CLVS1 TCGA-KK-A8IB 22 1 - + chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-KK-A8IB 2 62 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-KK-A8IB 4 4 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8IB 47 70 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-KK-A8IB 2 91 - - chr21 41498119 TMPRSS2 chr21 38474121 ERG TCGA-KK-A8IB 2 4 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8IB 208 94 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8IB 71 63 - - chr2 186486457 ZC3H15 chr2 210590106 CPS1 TCGA-KC-A7F3 35 2 + + chr1 85702156 ZNHIT6 chr1 197008486 CFHR5 TCGA-KC-A7F3 9 5 - + chr2 36356623 CRIM1 chr2 36754921 VIT TCGA-KC-A7F3 24 15 + + chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-KC-A7F3 44 43 - - chr21 41498119 TMPRSS2 chr21 38474121 ERG TCGA-KC-A7F3 2 2 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-KC-A7F3 90 53 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-KC-A7F3 39 41 - - chr1 168004793 ARCAP chr1 167765583 MPZL1 TCGA-EJ-5510 3 2 - + chr8 38997160 ADAM9 chr8 53939576 RGS20 TCGA-EJ-5510 7 4 + + chr8 38997160 ADAM9 chr8 53879258 RGS20 TCGA-EJ-5510 36 6 + + chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-EJ-5510 4 2 + + chr13 43874842 CCDC122 chr13 39601390 LHFP TCGA-EJ-5510 12 20 - - chr13 41949936 KIAA0564 chr7 107362420 COG5 TCGA-EJ-5510 7 8 - - chr7 107412502 COG5 chr13 43874927 CCDC122 TCGA-EJ-5510 11 14 - - chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-EJ-5510 2 2 - - chr13 111244294 ARHGEF7 chr10 87925513 PTEN TCGA-EJ-5510 38 7 + + chr10 91966757 BTAF1 chr12 70701323 PTPRR TCGA-EJ-5510 7 1 + - chr7 139360322 LUC7L2 chr7 13939246 ETV1 TCGA-EJ-5510 32 16 + - chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-EJ-A8FS 1 3 - - chr12 8465629 CLEC6A chr12 8513059 CLEC4D TCGA-EJ-A8FS 1 4 + + chr1 28538605 RCC1 chr1 108651563 HENMT1 TCGA-EJ-A8FS 6 3 + - chr15 65185075 CLPX chr15 65394548 IGDCC4 TCGA-EJ-A8FS 26 6 - - chr1 198157276 NEK7 chr1 158291134 CD1C TCGA-EJ-A8FS 28 11 + + chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-M7-A722 1 1 - - chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-M7-A722 9 3 + + chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-CH-5748 10 9 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-CH-5748 4 6 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-CH-5748 7 5 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-CH-5748 128 9 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-CH-5748 393 6 - - chr12 14770679 HIST4H4 chr12 12203400 LRP6 TCGA-CH-5748 13 17 - - chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-CH-5748 1 4 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-EJ-5531 3 3 + + chr12 8465629 CLEC6A chr12 8518164 CLEC4D TCGA-EJ-5531 3 2 + + chr12 8465629 CLEC6A chr12 8513059 CLEC4D TCGA-EJ-5531 4 1 + + chr16 2713529 PRSS27 chr16 1228814 TPSB2 TCGA-EJ-5531 21 1 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-EJ-5531 5 1 - - chr1 205679811 SLC45A3 chr21 38445620 ERG TCGA-EJ-5531 3 458 - - chr1 205680393 SLC45A3 chr21 38445621 ERG TCGA-EJ-5531 218 410 - - chr1 28508160 RCC1 chr14 50901829 ABHD12B TCGA-EJ-5531 1 1 + + chr3 143795001 SLC9A9 chr4 185506652 PDLIM3 TCGA-4L-AA1F 27 15 - - chr16 85735190 C16orf74 chr10 87792755 ATAD1 TCGA-4L-AA1F 16 19 - - chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-4L-AA1F 2 2 + + chr4 185647132 SORBS2 chr12 27755181 MRPS35 TCGA-4L-AA1F 8 17 - + chr4 185649467 SORBS2 chr12 27755181 MRPS35 TCGA-4L-AA1F 15 10 - + chr22 24270983 SPECC1L chr3 132040321 CPNE4 TCGA-4L-AA1F 36 20 + - chr22 24270983 SPECC1L chr3 132284170 CPNE4 TCGA-4L-AA1F 30 16 + - chr3 132332344 ACPP chr22 24263762 BCRP1 TCGA-4L-AA1F 3 18 + - chr3 132337554 ACPP chr22 24263762 BCRP1 TCGA-4L-AA1F 11 9 + - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-4L-AA1F 350 141 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-4L-AA1F 119 100 - - chr21 41498119 TMPRSS2 chr21 38423561 ERG TCGA-4L-AA1F 5 101 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-4L-AA1F 108 105 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-4L-AA1F 5 46 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-4L-AA1F 14 140 - - chr21 41506445 TMPRSS2 chr21 38423561 ERG TCGA-ZG-A9L0 7 4 - - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-ZG-A9L0 235 76 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-ZG-A9L0 884 58 - - chr11 95923875 MTMR2 chr11 33072474 TCP11L1 TCGA-ZG-A9L0 5 7 - + chr11 95914242 MTMR2 chr11 33072474 TCP11L1 TCGA-ZG-A9L0 14 7 - + chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-ZG-A9L0 4 3 + + chr2 9003540 MBOAT2 chr7 2547478 BRAT1 TCGA-EJ-A7NM 36 9 - - chr4 1806934 FGFR3 chr19 3061257 AES TCGA-EJ-A7NM 13 4 + - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-EJ-A7NM 2 5 - - chr21 41508081 TMPRSS2 chr21 38584945 ERG TCGA-EJ-A7NM 3 6 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-EJ-A7NM 1 5 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-EJ-A7NM 1 5 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-EJ-A7NM 1 6 - - chr21 41507950 TMPRSS2 chr21 38584945 ERG TCGA-EJ-A7NM 2 5 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-EJ-A7NM 3 6 - - chr21 41494356 TMPRSS2 chr21 38445621 ERG TCGA-EJ-A7NM 1 6 - - chr21 41498119 TMPRSS2 chr21 38474121 ERG TCGA-EJ-A7NM 2 3 - - chr3 126067947 SLC41A3 chr3 126161002 ALDH1L1 TCGA-V1-A8MM 28 14 - - chr21 41508081 TMPRSS2 chr17 43545668 ETV4 TCGA-V1-A8MM 45 188 - - chr21 41508081 TMPRSS2 chr17 43545367 ETV4 TCGA-V1-A8MM 1422 213 - - chr21 41507950 TMPRSS2 chr17 43545367 ETV4 TCGA-V1-A8MM 179 58 - - chr5 109789527 MAN2A1 chr2 188734949 DIRC1 TCGA-V1-A8MM 38 20 + - chr21 41498119 TMPRSS2 chr21 38474121 ERG TCGA-XJ-A83G 6 4 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-XJ-A83G 49 64 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-XJ-A83G 16 47 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-XJ-A83G 47 49 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-XJ-A83G 5 44 - - chr2 102737013 TMEM182 chr2 143703419 ARHGAP15 TCGA-XJ-A83G 13 4 + + chr5 87353235 RASA1 chr5 100562054 FAM174A TCGA-ZG-A8QX 38 8 + + chr1 28518308 RCC1 chr14 50901829 ABHD12B TCGA-ZG-A8QX 6 4 + + chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-ZG-A8QX 108 14 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-ZG-A8QX 381 6 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-ZG-A8QX 11 6 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-ZG-A8QX 3 13 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-ZG-A8QX 3 8 - - chr7 50732272 GRB10 chr7 49937622 ZPBP TCGA-ZG-A8QX 5 13 - - chr6 83575010 SNAP91 chr6 80273135 BCKDHB TCGA-EJ-7789 33 17 - + chr1 246327201 SMYD3 chr1 247860617 TRIM58 TCGA-EJ-7789 40 3 - + chr5 180264781 MAPK9 chr7 14621494 DGKB TCGA-EJ-7789 30 2 - - chr6 80203212 BCKDHB chr6 83407901 ME1 TCGA-EJ-7789 25 19 + - chr12 8459698 CLEC6A chr12 8515236 CLEC4D TCGA-EJ-7789 1 6 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-EJ-7789 3 6 + + chr1 28508160 RCC1 chr14 50901829 ABHD12B TCGA-EJ-7789 1 1 + + chr21 41507950 TMPRSS2 chr7 13939246 ETV1 TCGA-EJ-7789 1 1 - - chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-XK-AAIW 2 5 + + chr12 8465629 CLEC6A chr12 8513059 CLEC4D TCGA-XK-AAIW 1 5 + + chr12 8466593 CLEC6A chr12 8513059 CLEC4D TCGA-XK-AAIW 3 5 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-XK-AAIW 4 5 + + chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-XK-AAIW 188 15 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-XK-AAIW 58 9 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-XK-AAIW 5 1 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-XK-AAIW 5 7 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-XK-AAIW 3 15 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-VP-A878 104 163 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-VP-A878 2 70 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-VP-A878 6 199 - - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-VP-A878 1 159 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-VP-A878 174 199 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-VP-A878 70 159 - - chr5 55143513 CDC20B chr1 28407410 PHACTR4 TCGA-VP-A878 3 2 - + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-VP-A878 2 1 + + chr8 51898930 PCMTD1 chr8 52246664 ST18 TCGA-VP-A878 25 14 - - chr8 51898930 PCMTD1 chr8 52230077 ST18 TCGA-VP-A878 31 13 - - chr6 36490221 KCTD20 chr6 7987532 PIP5K1P1 TCGA-KK-A6E0 40 10 + + chr19 50873519 KLK2 chr7 13931749 ETV1 TCGA-KK-A6E0 1860 5011 + - chr19 50874880 KLK2 chr7 13931749 ETV1 TCGA-KK-A6E0 304 4897 + - chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-KK-A6E0 5 2 + + chr4 85778965 ARHGAP24 chr4 86194407 MAPK10 TCGA-KK-A6E0 14 19 + - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-KK-A6E0 1 1 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-KK-A6E0 7 2 - - chr9 131041735 LAMC3 chr3 132704371 NPHP3 TCGA-TK-A8OK 22 20 + - chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-TK-A8OK 1 2 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-TK-A8OK 39 2 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-TK-A8OK 15 4 - - chrX 129499732 SMARCA1 chrX 111682236 ALG13 TCGA-TK-A8OK 10 18 - + chr5 59586329 PDE4D chr5 177303320 RAB24 TCGA-TK-A8OK 18 5 - - chr17 44503326 GPATCH8 chr10 75234743 COMTD1 TCGA-TK-A8OK 18 7 - - chr5 132892164 AFF4 chr2 1209103 SNTG2 TCGA-TK-A8OK 28 14 - + chr2 28519763 PLB1 chr2 230814049 CAB39 TCGA-TK-A8OK 30 19 + + chr17 82080931 FASN chr1 205718005 NUCKS1 TCGA-TK-A8OK 19 7 - - chr1 182881647 DHX9 chr5 177306422 PRELID1 TCGA-TK-A8OK 5 4 + + chr22 38823083 NPTXR chr22 38708845 GTPBP1 TCGA-TK-A8OK 11 7 - + chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-ZG-A9LB 1 2 - - chr12 8459698 CLEC6A chr12 8515236 CLEC4D TCGA-ZG-A9LB 2 1 + + chr11 14786685 PDE3B chr11 62567528 EEF1G TCGA-ZG-A9LB 14 5 + - chr11 14786685 PDE3B chr11 62567528 MIR3654 TCGA-ZG-A9LB 33 20 + - chr10 87894109 PTEN chr1 162383182 C1orf226 TCGA-VP-A87J 19 17 + + chr22 20793193 PI4KA chr4 83482244 FAM175A TCGA-VP-A87J 8 13 - - chr12 8465629 CLEC6A chr12 8513059 CLEC4D TCGA-VP-A87J 4 6 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-VP-A87J 5 6 + + chr1 155933633 KIAA0907 chr1 155459898 ASH1L TCGA-VP-A87J 3 1 - - chr11 120337275 ARHGEF12 chr11 120905290 GRIK4 TCGA-VP-A87J 16 9 + + chr11 120337275 ARHGEF12 chr11 120940347 GRIK4 TCGA-VP-A87J 18 18 + + chr7 44843277 H2AFV chr22 19480158 CDC45 TCGA-VP-A87J 40 12 - + chr7 44847969 H2AFV chr22 19480158 CDC45 TCGA-VP-A87J 31 12 - + chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-VP-A87J 1 2 - - chr5 62306536 KIF2A chr5 64369615 RNF180 TCGA-J9-A52D 7 11 + + chr12 101637051 MYBPC1 chr16 28539113 NUPR1 TCGA-J9-A52D 21 5 + - chr5 61332948 ZSWIM6 chr5 64885443 CWC27 TCGA-J9-A52D 37 2 + + chr5 61332948 ZSWIM6 chr5 64971703 CWC27 TCGA-J9-A52D 28 3 + + chr12 8465629 CLEC6A chr12 8513059 CLEC4D TCGA-J9-A52D 4 1 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-J9-A52D 4 2 + + chr13 96023040 UGGT2 chr13 37783360 TRPC4 TCGA-J9-A52D 40 1 - - chr1 205679811 SLC45A3 chr21 38445620 ERG TCGA-J9-A52D 2 91 - - chr1 205680393 SLC45A3 chr21 38445621 ERG TCGA-J9-A52D 25 85 - - chr7 92246519 ANKIB1 chr7 91207165 CDK14 TCGA-YL-A9WY 20 14 + + chr17 19936286 AKAP10 chr17 18058868 C17orf39 TCGA-YL-A9WY 32 11 - + chr17 19936286 AKAP10 chr17 18058868 GID4 TCGA-YL-A9WY 2 7 - + chr8 101915808 NCALD chr7 154967910 PAXIP1 TCGA-YL-A9WY 31 11 - - chr8 67064538 CSPP1 chr8 67434240 CPA6 TCGA-YL-A9WY 31 15 + - chr17 46630450 NSF chr5 173020238 ATP6V0E1 TCGA-YL-A9WY 39 3 + + chr4 94758068 BMPR1B chr4 94640276 PDLIM5 TCGA-YL-A9WY 1 3 + + chr19 652826 RNF126 chr19 46937264 ARHGAP35 TCGA-YL-A9WY 16 1 - + chr8 40674704 ZMAT4 chr8 28189649 ELP3 TCGA-YL-A9WY 31 2 - + chr5 134538083 PHF15 chr5 156329534 SGCD TCGA-YL-A9WY 13 13 + + chr10 11597631 USP6NL chr10 5880376 ANKRD16 TCGA-YL-A9WY 3 14 - - chr10 11611443 USP6NL chr10 5862691 ANKRD16 TCGA-YL-A9WY 31 14 - - chr10 11597631 USP6NL chr10 5862691 ANKRD16 TCGA-YL-A9WY 2 17 - - chr10 11597631 USP6NL chr10 5800705 GDI2 TCGA-YL-A9WY 23 7 - - chr5 68227009 PIK3R1 chr12 93469189 MRPL42 TCGA-YL-A9WY 27 5 + + chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-YL-A9WY 293 21 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-YL-A9WY 92 11 - - chr21 41488394 TMPRSS2 chr21 38474121 ERG TCGA-YL-A9WY 1 1 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-YL-A9WY 3 1 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-YL-A9WY 1 20 - - chr10 113588969 NRAP chr5 140568158 SLC35A4 TCGA-G9-6338 3 3 - + chr17 82212784 CCDC57 chr7 24291662 NPY TCGA-G9-6338 27 15 - + chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-G9-6338 21 10 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-G9-6338 53 22 - - chr21 41498119 TMPRSS2 chr21 38474121 ERG TCGA-G9-6338 1 2 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-G9-6338 17 22 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-G9-6338 14 11 - - chr21 41498119 TMPRSS2 chr21 38423561 ERG TCGA-G9-6338 18 11 - - chr22 35606770 MB chr6 123437406 TRDN TCGA-G9-6338 29 3 - - chr1 28508160 RCC1 chr14 50901829 ABHD12B TCGA-G9-6338 2 3 + + chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-FC-A4JI 1 1 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-FC-A4JI 233 10 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-FC-A4JI 75 4 - - chr9 14146689 NFIB chr7 74773979 NCF1 TCGA-FC-A4JI 20 9 - + chr2 165870797 TTC21B chr2 164743875 COBLL1 TCGA-FC-A4JI 33 8 - - chr2 165858215 TTC21B chr2 164743875 COBLL1 TCGA-FC-A4JI 39 19 - - chr3 84959668 CADM2 chr3 23532554 UBE2E2 TCGA-FC-A4JI 23 6 + + chr8 47407961 KIAA0146 chr8 133075130 SLA TCGA-FC-A4JI 5 10 + - chr14 37606742 TTC6 chr21 26954871 ADAMTS5 TCGA-FC-A4JI 24 18 + - chr3 119905755 GSK3B chr3 150457076 TSC22D2 TCGA-FC-A4JI 12 18 - + chr8 32605683 NRG1 chr8 79636802 STMN2 TCGA-FC-A4JI 40 11 + + chr8 52683549 RB1CC1 chr8 88074743 MMP16 TCGA-FC-A4JI 14 13 - - chr2 192750872 PCGEM1 chr3 127927764 KBTBD12 TCGA-FC-A4JI 37 4 + + chr8 70403700 NCOA2 chr8 38057081 EIF4EBP1 TCGA-FC-A4JI 28 14 - + chr8 55743481 TMEM68 chr8 104424389 DPYS TCGA-FC-A4JI 29 15 - - chr11 2964680 NAP1L4 chr3 182913861 ATP11B TCGA-FC-A4JI 11 5 - + chr7 116888190 CAPZA2 chr3 100146973 CMSS1 TCGA-FC-A4JI 32 17 + + chr7 116888190 CAPZA2 chr3 100146973 C3orf26 TCGA-FC-A4JI 13 6 + + chr7 87341523 TP53TG1 chr4 71339370 SLC4A4 TCGA-FC-A4JI 17 8 - + chr8 47407961 SPIDR chr8 133075130 SLA TCGA-FC-A4JI 20 1 + - chr2 164837428 COBLL1 chr2 163593796 FIGN TCGA-FC-A4JI 10 20 - - chr11 108009372 CUL5 chr11 132437359 OPCML TCGA-FC-A4JI 30 2 + - chr21 41507950 TMPRSS2 chr21 38584945 ERG TCGA-Y6-A8TL 7 3 - - chr21 41508081 TMPRSS2 chr21 38584945 ERG TCGA-Y6-A8TL 9 8 - - chr1 28518308 RCC1 chr14 50901829 ABHD12B TCGA-Y6-A8TL 1 1 + + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-FC-7961 3 3 + + chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-FC-7961 3 2 + + chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-FC-7961 36 25 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-FC-7961 6 33 - - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-FC-7961 8 24 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-FC-7961 66 33 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-FC-7961 27 24 - - chr21 46126541 COL6A2 chr16 31188324 FUS TCGA-FC-7961 4 6 + + chr1 213176492 RPS6KC1 chr1 212988512 VASH2 TCGA-FC-7961 18 19 + + chr19 50880566 KLK2 chr12 57102990 STAT6 TCGA-EJ-7782 26 19 + - chr6 79631506 SH3BGRL2 chr6 55514196 HMGCLL1 TCGA-EJ-7782 11 12 + - chr6 79631506 SH3BGRL2 chr6 55516603 HMGCLL1 TCGA-EJ-7782 22 11 + - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-EJ-7782 3 1 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-EJ-7782 3 25 - - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-EJ-7782 52 41 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-EJ-7782 2 64 - - chr21 41498119 TMPRSS2 chr21 38474121 ERG TCGA-EJ-7782 1 1 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-EJ-7782 104 64 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-EJ-7782 32 41 - - chrX 104156878 MCART6 chrX 105195475 IL1RAPL2 TCGA-EJ-7782 28 12 - + chr1 144448775 NBPF15 chr1 26729650 ARID1A TCGA-EJ-7782 16 20 - + chr22 38483440 DDX17 chr20 48999240 ARFGEF2 TCGA-EJ-7782 4 4 - + chr5 87268990 RASA1 chr5 22212643 CDH12 TCGA-EJ-7782 29 11 + - chr7 45038426 CCM2 chr7 92518255 PEX1 TCGA-EJ-7782 16 20 + - chr6 7895106 TXNDC5 chr6 7176655 RREB1 TCGA-EJ-7782 14 3 - + chr17 81843166 P4HB chr22 41675195 NHP2L1 TCGA-EJ-7782 4 2 - - chr6 52010309 PKHD1 chr6 7334090 CAGE1 TCGA-EJ-7782 3 15 - - chrX 105234004 IL1RAPL2 chr2 167964726 STK39 TCGA-EJ-7782 39 12 + - chr2 149119163 LYPD6B chr4 150798142 LRBA TCGA-EJ-7782 40 17 + - chr3 86968590 VGLL3 chr3 29587114 RBMS3 TCGA-G9-7510 18 14 - + chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-G9-7510 3 3 - - chr1 157134112 ETV3 chr1 158842134 MNDA TCGA-G9-7510 14 4 - + chr20 63674093 AL353715.1 chr20 63644309 STMN3 TCGA-G9-7510 15 2 - - chr4 165238899 KLHL2 chr4 165464390 CPE TCGA-G9-7510 38 19 + + chr16 72782885 ZFHX3 chr5 53887383 ARL15 TCGA-G9-7510 13 9 - - chr20 63674184 RTEL1 chr20 63644309 STMN3 TCGA-G9-7510 29 13 + - chr20 63674093 RTEL1 chr20 63644309 STMN3 TCGA-G9-7510 21 19 + - chr5 94582433 KIAA0825 chr5 90828944 GPR98 TCGA-ZG-A9ND 27 11 - + chr15 73178427 NEO1 chr15 71817552 NR2E3 TCGA-ZG-A9ND 28 16 + + chr1 28508160 RCC1 chr14 50901829 ABHD12B TCGA-ZG-A9ND 2 5 + + chr12 8459698 CLEC6A chr12 8515236 CLEC4D TCGA-ZG-A9ND 2 1 + + chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-ZG-A9ND 35 17 - - chr15 27480787 GABRG3 chr5 86282731 NBPF22P TCGA-KK-A8IF 33 1 + + chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8IF 10 9 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8IF 36 4 - - chr21 41507950 TMPRSS2 chr21 38423561 ERG TCGA-KK-A8IF 1 8 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-KK-A8IF 1 4 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-KK-A8IF 2 3 - - chr6 125153970 TPD52L1 chr6 130313093 SAMD3 TCGA-KK-A8IF 22 2 + - chr21 41498119 TMPRSS2 chr21 38445621 ERG TCGA-J4-A83J 76 106 - - chr21 41508081 TMPRSS2 chr21 38445621 ERG TCGA-J4-A83J 241 216 - - chr21 41507950 TMPRSS2 chr21 38445621 ERG TCGA-J4-A83J 63 96 - - chr21 41508081 TMPRSS2 chr21 38474121 ERG TCGA-J4-A83J 8 5 - - chr21 41506445 TMPRSS2 chr21 38445621 ERG TCGA-J4-A83J 3 54 - - chr21 41508081 TMPRSS2 chr21 38423561 ERG TCGA-J4-A83J 3 216 - - chr21 41498119 TMPRSS2 chr21 38423561 ERG TCGA-J4-A83J 1 103 - - chr21 41498119 TMPRSS2 chr21 38474121 ERG TCGA-J4-A83J 8 2 - - chr2 188383889 GULP1 chr2 182989186 NCKAP1 TCGA-J4-A83J 37 10 + - chr5 168414590 WWC1 chr2 1165548 SNTG2 TCGA-J4-A83J 40 18 + + chr2 148983766 KIF5C chr2 178675995 TTN TCGA-J4-A83J 30 1 + - CAACTCG chr3 64594258 ADAMTS9 chr3 63556543 SYNPR TCGA-J4-A83J 38 10 - + chr12 8465629 CLEC6A chr12 8515236 CLEC4D TCGA-J4-A83J 2 3 + + chr12 8459698 CLEC6A chr12 8515236 CLEC4D TCGA-J4-A83J 1 3 + + chr2 183023806 NCKAP1 chr2 149160764 LYPD6B TCGA-J4-A83J 34 2 - + chr2 183023806 NCKAP1 chr2 149205253 LYPD6B TCGA-J4-A83J 39 16 - + chr2 183023806 NCKAP1 chr2 149130883 LYPD6B TCGA-J4-A83J 22 6 - + chr12 76450851 OSBPL8 chr12 71441587 TSPAN8 TCGA-J4-A83J 37 6 - - chr15 88901551 MFGE8 chr15 88887344 HAPLN3 TCGA-VP-AA1N 1 2 - - chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-VP-AA1N 1 1 + + chr12 8465629 CLEC6A chr12 8520226 CLEC4D TCGA-VP-AA1N 1 2 + + chr4 173304118 GALNT7 chr4 174331482 CEP44 TCGA-VP-AA1N 25 16 + + chr5 127517776 PRRC1 chr5 148214905 SPINK6 TCGA-YL-A8SH 7 12 + + chr12 8465629 CLEC6A chr12 8513659 CLEC4D TCGA-YL-A8SH 5 4 + + chr11 57762046 CTNND1 chr11 59181739 DTX4 TCGA-YL-A8SH 21 1 + + chr12 56734147 PRIM1 chr12 56714686 NACA TCGA-YL-A8SH 2 1 - - chr8 108228267 EIF3E chr8 132794410 PHF20L1 TCGA-YL-A8SH 30 9 - +